Disease: Lupus Erythematosus, Systemic
Source: GWASCAT ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 34
rs4246905
TNFSF15
0.716 0.400 9 114790969 missense variant T/A;C snv 0.76 15
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48 7
rs12928404
ATXN2L
0.724 0.240 16 28835925 splice region variant T/C snv 0.44 0.45 15
rs602662
LOC105447645 ; FUT2
0.716 0.280 19 48703728 missense variant G/A snv 0.40 0.47 15
rs10822050 0.724 0.240 10 62679011 downstream gene variant T/C snv 0.33 14
rs10988542
FNBP1
0.724 0.240 9 129894985 intron variant G/A;C snv 14
rs11117431 0.807 0.160 16 85981710 intron variant A/G snv 0.18 6
rs11145763
CARD9
0.724 0.240 9 136369144 intron variant A/C;G;T snv 14
rs114846446
LINC01250
0.724 0.240 2 2944140 intron variant G/A snv 9.5E-03 14
rs11580078
C1orf141 ; IL23R
0.724 0.240 1 67203951 intron variant C/A;G snv 14
rs117372389
NKD1
0.724 0.240 16 50634166 3 prime UTR variant G/T snv 1.1E-02 14
rs11741255
IRF1-AS1
0.724 0.240 5 132475490 intron variant G/A snv 0.29 14
rs11839053 0.724 0.240 13 106410694 intergenic variant T/C snv 7.0E-02 14
rs12232497 0.701 0.360 17 39883866 intergenic variant T/C snv 0.35 15
rs1250563
ZMIZ1
0.724 0.240 10 79287626 intron variant G/C snv 0.24 14
rs12598357 0.724 0.240 16 28329624 intergenic variant A/G snv 0.43 15
rs1267499
LOC101928354
0.807 0.160 6 14715651 intron variant T/A;C snv 6
rs12863738 0.724 0.240 X 136949968 intron variant C/T snv 0.16 14
rs1332099 0.724 0.240 10 99538694 downstream gene variant T/C;G snv 14
rs1689510
SUOX
0.724 0.240 12 56002984 non coding transcript exon variant G/C snv 0.25 16
rs17466626
LOC105369736 ; LRRK2
0.724 0.240 12 40366829 non coding transcript exon variant A/G snv 1.7E-02 14
rs17885785
IGF2 ; IGF2-AS ; INS-IGF2
0.724 0.240 11 2146620 non coding transcript exon variant C/T snv 0.14 14
rs2066363
ADGRL2
0.724 0.240 1 81771892 intron variant C/T snv 0.71 14
rs2075184 0.724 0.240 2 102464132 intergenic variant T/C snv 0.78 14